PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 305aa    MW: 34741.8 Da    PI: 8.1165
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.91.9e-1981133158
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 
                    r ++sL+llt+kf+kl+ ++++++++ln  a+ L   +v  ++RRiYDi+NVLe++nl
  MDP0000124881  81 RFDNSLGLLTKKFIKLIYEAKDRTLDLNRTAEVL---EV--QKRRIYDITNVLEGINL 133
                    6799******************************...99..***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-1880133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.13E-1181133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-1781148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-1683133IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440748.11E-21134228No hitNo description
CDDcd146602.23E-30134228No hitNo description
PfamPF164214.4E-24135228IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSLLVKLRPK QEIDNDTQIG GQEAAAGPSK VMKGILPLPQ SCSGAKHNGK LKVPKHTKVX  60
TQRSTADFCN GLGPAQAIGC RFDNSLGLLT KKFIKLIYEA KDRTLDLNRT AEVLEVQKRR  120
IYDITNVLEG INLDEVESLX EEECRLDDAI XEKQELLRAL EQDEKYLFXT EEDISSLHCF  180
QNQTLIAIKA PQASYIEVVD PDEDISFQQR QFRMIVKSTI GPIDVYLLRP MMIIGLDQNL  240
MLALQIYGRI RXGPKAKTSF KTVLRRVAQR WAMNIDRSVN GIRXLIVPDD MREYHILFLF  300
CHTKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-1480138665PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23441e-124leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377229.11e-152PREDICTED: transcription factor E2FC
SwissprotQ9FV702e-60E2FC_ARATH; Transcription factor E2FC
TrEMBLA0A067HAK62e-82A0A067HAK6_CITSI; Uncharacterized protein
STRINGVIT_18s0001g14110.t015e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-61E2F/DP family protein